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View Structure Prediction Details

Protein: GUX4_ARATH
Organism: Arabidopsis thaliana
Length: 557 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GUX4_ARATH.

Description E-value Query
Range
Subject
Range
gi|50931439, gi|... - gi|50931439|ref|XP_475247.1| putative glycogenin [Oryza sativa (japonica cultivar-group)], gi|463911...
568.0 [0..5] [555..85]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTKTHNSRG KIFMIYLILV SLSLLGLILP FKPLFRITSP SSTLRIDLPS PQVNKNPKWL  60
   61 RLIRNYLPEK RIQVGFLNID EKERESYEAR GPLVLKNIHV PLDHIPKNVT WKSLYPEWIN 120
  121 EEASTCPEIP LPQPEGSDAN VDVIVARVPC DGWSANKGLR DVFRLQVNLA AANLAVQSGL 180
  181 RTVNQAVYVV FIGSCGPMHE IFPCDERVMR VEDYWVYKPY LPRLKQKLLM PVGSCQIAPS 240
  241 FAQFGQEAWR PKHEDNL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [258-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASKAVTALPR RLRVAYVTVL HSSEAYVCGA IALAQSIRQS GSHKDMILLH DHTITNKSLI  60
   61 GLSAAGWNLR LIDRIRSPFS QKDSYNEWNY SKLRVWQVTD YDKLVFIDAD FIILKKLDHL 120
  121 FYYPQLSASG NDKVLFNSGI MVLEPSACMF KDLMEKSFKI ESYNGGDQGF LNEIFVWWHR 180
  181 LSKRVNTMKY FDEKNHRRHD LPENVEGLHY LGLKPWVCYR DYDCNWDISE RRVFASDSVH 240
  241 EKWWKVYDKM SEQLKGYCGL NKNMEKRIEK WRRIAKNNSL PDRHWEIEVR DPRKTNLLVQ 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.154902
Match: 1zcvA
Description: apo form of a mutant of glycogenin in which Asp159 is replaced by Asn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.408140110158132 bayes_pls_golite062009
catalytic activity 0.222379358704242 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle