YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15217774, gi\|...
Organism:	Arabidopsis thaliana
Length:	592 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15217774, gi|....

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	222.0	[0..13]	[563..1920]
gi\|76643989 - gi\|76643989\|ref\|XP_615306.2\| PREDICTED: similar to myosin, heavy polypeptide 4, skeletal muscle [Bos...	206.0	[0..1]	[563..374]
gi\|50757613 - gi\|50757613\|ref\|XP_415578.1\| PREDICTED: similar to myosin heavy chain [Gallus gallus]	203.0	[0..4]	[563..858]
MYH1_HORSE - Myosin-1 OS=Equus caballus GN=MYH1 PE=2 SV=1	203.0	[0..4]	[565..910]
MYH1_PIG - Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1	203.0	[0..4]	[565..911]
gi\|116062143 - gi\|116062143\|dbj\|BAF34702.1\| fast skeletal myosin heavy chain isoform mMYH-2 [Oryzias latipes]	202.0	[0..12]	[580..918]
MYSS_CYPCA - Myosin heavy chain, fast skeletal muscle OS=Cyprinus carpio PE=2 SV=2	202.0	[0..12]	[565..916]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMSLHLNKK LLKEKKTLQN YPSEYGFASD TDRNEKLIVV GYVLRIFAQR VTGKFVLMMI  60
   61 WDEVGEDKFE REKVLLDIEQ ECVE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.906	a.74.1	Cyclin-like

Predicted Domain #2

Region A:
Residues: [85-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYRRKVDHAN VSRSRLHQEL AESEAELTHF LLCLGERSVP GRPEKKGGTL REQLDSIAPA  60
   61 LREMRLRKDE RVKQFRSVKG EIQKISAEIA GRSTYEDSTR KITIDDNDLS NKKLEEYQNE 120
  121 LHRLHDEKNE RLQKVDIYIC AIRDLSATLG TEASMIITKI HPSLNDLYGI SKNISDDILK 180
  181 KLNGTVVSLE EEKHKRLEKL HHLGRALSNL WNLMDASYED RQKFFHVIDL LSSAPSDVCA 240
  241 PGSITLDIIQ QAEAEVKRLD QLKASRIKEL FIKKQKELED TCNMSHMETP STEMGNITNL 300
  301 VDSGEVDHVD LLAAMDEKIA RAKEEAASRK GIIEKVDRWM LASDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [431-592]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RWLEEYDQDE NRYSVSRNAH RNLRRAERAR ITVSKISGLV ESILVKAKSW EVERQKVFLY  60
   61 NEVPLVAMLQ EYNKLRQEKE MEKQRLREMK KMSIPQPVAE GDNFYMARPA SSNRRISNRS 120
  121 MNGGFGSGSP INRKYSGGFN NTNNNYTALG TSIRRESRKS EA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits