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View Structure Prediction Details

Protein: gi|15233998, gi|...
Organism: Arabidopsis thaliana
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15233998, gi|....

Description E-value Query
Range
Subject
Range
gi|73999378 - gi|73999378|ref|XP_535071.2| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...
232.0 [0..10] [237..143]

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Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKREFMELF EAALRAAKSV KGDENSPEVS RFVDAMNRLK EAPKSLVCDV VCKTSMGQGL  60
   61 EFFIDHKNPK IRSEGRILRD LWMKFFYASG REKSRDNREA AVKIPTHATM KKTGDSKRDK 120
  121 VREILQTSLA KVASEVVDTE MKTRVTACDP WVVAVSVETA MFENLGCFMG PQKAKYRSIL 180
  181 FNMGDSNNPD LRRKVLLGEI SGERLVKMEK EEMGSSWYTN SRRNPLYEST HYTDFRFPQI 240
  241 KAHLWHKVRV FSLFTYILER TKRSFT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1pqvS
Description: RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle