YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15220642, gi|...
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15220642, gi|....

Description E-value Query
Range
Subject
Range
gi|56236062, gi|... - gi|79375455|ref|NP_176975.2| iron ion binding / oxidoreductase, acting on paired donors, with incorp...
400.0 [0..53] [383..59]

Back

Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPLLSLTS LPLILLTSSS LLSPLEVNLL KLKDFAFVFI SYFCEIQRDD LCCVELTERL  60
   61 KEKIEETFGC EYELFIEFTG LISWCKGASI GWHSDDNRSY LKQRDFAAVC YLNSYEKDFI 120
  121 GGLFRFQSGE PVTVAPSAGD VIMYTADDRN IHSVDEVTDG ERLTLALWFS RDSSHDEDSK 180
  181 LLSRLSQCTS HEVCLPLPAS TNMYWFCPHQ DGSNQNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 2hbtA
Description: No description for 2hbtA was found.

Predicted Domain #2
Region A:
Residues: [218-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFDVCVARLH LLGFDVHSLQ GEDHSTDASE QLMGPLQLAK GGKLLTRKFA NILHALQVVQ  60
   61 FYHWKASELV TSNVENDTLE EVKAMSHSQL ETINALKSVF LLDENLVATT FGYSCSGEDR 120
  121 KDSLDLTGIA LAVTSWEEYS CKLLKELLSS LPQWKTYQTI HKVESD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle