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View Structure Prediction Details

Protein: TRO_ARATH
Organism: Arabidopsis thaliana
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRO_ARATH.

Description E-value Query
Range
Subject
Range
gi|114619685 - gi|114619685|ref|XP_001170132.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
gi|158257308, gi... - gi|16198510|gb|AAH15936.1| ASH2L protein [Homo sapiens], gi|158257308|dbj|BAF84627.1| unnamed protei...
279.0 [0..151] [500..135]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLQSNSKI EEAEQNPKIE EAQVSVSLPE EPTGVLLPSE LVDDSAPPES SDAVEESIET  60
   61 ASEAEVSISL LEGTTTGTAL LPSEENDLAP LESSGIIEEP IDTDLEKLDV VAMDVDQPGS 120
  121 DLKIESDSFS EEAPTTSSSD NPKSPKLDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VANQNGSAME EDEGDEEQDD PPHKKLKQLD CLTSVAVKEE EEPEQVLPSE AMVVEEAATL  60
   61 VASAAKKSKS KKKNNNVWVT KSTRKGKKKS KANTPNPAAV EDKVLITPVP RFPDKGDDT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #3
Region A:
Residues: [269-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLEICLSKV YKAEKVEISE DRLTAGSSKG YRMVRATRGV VEGAWYFEIK VLSLGETGHT  60
   61 RLGWSTDKGD LQAPVGYDGN SFGFRDIDGC KIHKALRETY AEEGYKEGDV IGFYINLPDG 120
  121 ESFAPKPPHY VFYKGQRYIC APDAKEEPPK VVPGSEISFF KNGVCQGAAF TDIVGGRYYP 180
  181 AASMYTLPDQ SNCLVKFNFG PSFEFFPEDF GGRATPRPMW EVPYHGFNGR LETNGSEDMK 240
  241 S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 2fnjA
Description: No description for 2fnjA was found.

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Created and Maintained by: Michael Riffle