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View Structure Prediction Details

Protein: CSLC4_ARATH
Organism: Arabidopsis thaliana
Length: 673 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLC4_ARATH.

Description E-value Query
Range
Subject
Range
gi|162675316, gi... - gi|168041924|ref|XP_001773440.1| cellulose synthase-like C3, glycosyltransferase family 2 [Physcomit...
gi|114224789 - gi|114224789|gb|ABI55235.1| cellulose synthase-like C3 [Physcomitrella patens]
427.0 [0..6] [673..22]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNSVAVTM EKPDNFSLLE INGSDPSSFP DKRKSISPKQ FSWFLLLKAH RLISCLSWLV  60
   61 SSVKKRIAFS AKNINEEEDP KSRGKQMYRF IKACLVISII ALSIEIVAHF KKWNLDLINR 120
  121 PSWEVYGLVE WSYMAWLSFR SDYIAPLVIS LS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFCTVLFLIQ SLDRLVLCLG CFWIKFKKIE PKLTEESIDL EDPSSFPMVL IQIPMCNERE  60
   61 VYEQSIGAAS QLDWPKDRIL IQVLDDSDDP NLQLLIKEEV SVWAEKGVNI IYRHRLIRTG 120
  121 YKAGNLKSAM TCDYVKDYEF VTIFDADFTP NPDFLKKTVP HFKGNPELGL VQARWSFVNK 180
  181 DENLLTRLQN INLCFHFEVE QQVNGVFLNF FGFNGTAGVW RIKALEESGG WLERTTVEDM 240
  241 DIAVRAHLNG WKFIYLNDVE VTCELPESYE AYKKQQHRWH SGPMQLFRLC LPSIIKSKIS 300
  301 VWKKANLIFL FFLLRKLILP FYSFTL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.045757
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #3
Region A:
Residues: [479-673]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FCIILPLTMF IPEAELPLWI ICYVPIFISL LNILPSPKSF PFLVPYLLFE NTMSITKFNA  60
   61 MISGLFQFGS AYEWVVTKKT GRSSESDLLA FAEKEEKLHR RNSESGLELL SKLKEQETNL 120
  121 VGQETVKKSL GGLMRPKNKK KTNMVFKKEL GLAFLLLTAA ARSFLSAHGL HFYFLLFQGL 180
  181 SFLVVGLDLI GEQIS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle