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View Structure Prediction Details

Protein: gi|8567778, gi|1...
Organism: Arabidopsis thaliana
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8567778, gi|1....

Description E-value Query
Range
Subject
Range
gi|20258971, gi|... - gi|8567777|gb|AAF76349.1| unknown protein [Arabidopsis thaliana], gi|20258971|gb|AAM14201.1| unknown...
437.0 [0..1] [451..1]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRESVAVVT APPSATAPGT ASVATSLAPG FRFHPTDEEL VSYYLKRKVL GQPVRFDAIG  60
   61 EVDIYKHEPW DLAVFSRLKT RDQEWYFYSA LDKKYGNGAR MNRATNRGYW KATGKDREIR 120
  121 RDILLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE KNGNLVQDAY VLCRVFHKNN 180
  181 IGPP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.0
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [185-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGNRYAPFME EEWADDEGAL IPGIDVKLRL EPPPVANGND QMDQEIQSAS KSLININEPP  60
   61 RETAPLDIES DQQNHHENDL KPEEHNNNNN YDENEETLKR EQMEEEERPP RPVCVLNKEA 120
  121 PLPLLQYKRR RQSESNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [322-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSRNTQDHC SSTTTTVDNT TTLISSSAAA TNTAISALLE FSLMGISDKK EKPQQPLRPH  60
   61 KEPLPPQTPL ASPEEKVNDL QKEIHQMSVE RETFKLEMMS AEAMISILQS RIDALRQENE 120
  121 ELKKNNANGQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle