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View Structure Prediction Details

Protein: ERF11_ARATH
Organism: Arabidopsis thaliana
Length: 153 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF11_ARATH.

Description E-value Query
Range
Subject
Range
gi|58761187 - gi|58761187|gb|AAW82334.1| AP2/EREBP transcription factor BABY BOOM [Medicago truncatula]
173.0 [0..4] [148..243]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGVAVKAD VAVKMKRERP FKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY  60
   61 DTAVFYLRGP TATLNFPELL PCTSAEDMSA ATIRKKATEV GAQVDAIGAT VVQNNKRRRV 120
  121 FSQKRDFGGG LLELVDLNKL PDPENLDDDL VGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 2gccA
Description: SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.339357445627225 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle