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View Structure Prediction Details

Protein: GBIS2_ARATH
Organism: Arabidopsis thaliana
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBIS2_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
596.0 [0..12] [458..22]

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Predicted Domain #1
Region A:
Residues: [1-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQTKFDYE SLAFTKLSHS QWTDYFLSVP IDDSELDAIT REIDIIKPEV RKLLSSKGDD  60
   61 ETSKRKVLLI QSLLSLGLAF HFENEIKDIL EDAFRRIDDI TGDENDLSTI SIMFRVFRTY 120
  121 GHNLPSSVFK RFTGDDGKFE RSLTEDAKGI LSLYEAAHLG TTTDYILDEA LEFTSSHLKS 180
  181 LLVGGMCRPH ILRLIRNTLY LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL 240
  241 QLHYIKELKT FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY 300
  301 LLTILDDACD HYFSIPELTR LVDCVERWNH DGIHTLEDIS RIIFKLALDV FDDIGRGVRS 360
  361 KGCSYYLKEM LEELKILVRA NLDLVKWARG NQLPSFEEHV EVGGIALTTY ATLMYSFVGM 420
  421 GEAVGKEAYE WVRSRPRLIK SLAAKGRLMD DITDFEVKII NLFFDLLLFV F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 160.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle