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View Structure Prediction Details

Protein: CDS5_ARATH
Organism: Arabidopsis thaliana
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDS5_ARATH.

Description E-value Query
Range
Subject
Range
gi|4895237, gi|2... - gi|4895237|gb|AAD32822.1|AC007659_4 putative phosphatidate cytidylyltransferase [Arabidopsis thalian...
325.0 [0..18] [395..50]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPFVEVCRY KPLPLSLSSL CTCPCRSSPR KYLILPQFSE KYPKPLLSHS RFTPISVNRR  60
   61 VITAVARAES NQIGDDANSK EEHNIDQELQ N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEDSSLDDQ KQKSRSQFKK RVTFGLGIGL SVGGIVLAGG WVFTVAVAAA VLLSAREYFE  60
   61 LVRSKGIAQG MTPPPRYLSR VCSIICALMP ILTL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [186-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFGHIDISIT SAAFVVAMAL LLQRGNPRFS QLSSTMFGLF YCGYLPCFWV KLRCGLTAPV  60
   61 LNTGIGRSWP TILGGQAHWT VGLVAILISF CGIIASDTFA FLGGKAFGRT PLISISPKKT 120
  121 WEGAFAGLVG CISITILLSK SLSWPQSLVS TIAFGVLNFF GSVFGDLTES MIKRDAGVKD 180
  181 SGSLIPGHGG ILDRVDSYIF TGALAYSFVR LHGV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle