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View Structure Prediction Details

Protein: gi|15242400, gi|...
Organism: Arabidopsis thaliana
Length: 272 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242400, gi|....

Description E-value Query
Range
Subject
Range
gi|50923907, gi|... - gi|50923907|ref|XP_472314.1| OSJNBa0072K14.7 [Oryza sativa (japonica cultivar-group)], gi|255675414|...
183.0 [0..23] [272..2]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKPPVRKM KFAPKAPPKR VPKPEVKPEV VEDNSNSAQA SELLRRVNER SLRKPKADKK  60
   61 VPASQVAWLG GVVNSTRSNK YLNRSNGAYG STSTQEIEYK EPWDYYSYYP ITLPMRRPYA 120
  121 GDPEVLDVEE FMQAGGHHED SLNTAANLGL ME

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGEQKMFFM RLPSVPLAST PTENLETRPN IKGPVEKKTV DLKALPEGYM GKLLVYKSGA  60
   61 VKMKLGEVLY DVSPGLKSEF AQDVMVVNTE QKNCCLVGDV YKHAVLTPDI DSILKDIENI 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 53.229148
Match: PF05132.5
Description: No description for PF05132.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.276 N/A N/A b.60.1 Lipocalins
View Download 0.237 N/A N/A d.233.1 Inhibitor of vertebrate lysozyme, Ivy
View Download 0.204 N/A N/A d.110.4 SNARE-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle