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View Structure Prediction Details

Protein: OSB2_ARATH
Organism: Arabidopsis thaliana
Length: 371 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSB2_ARATH.

Description E-value Query
Range
Subject
Range
gi|26451527 - gi|26451527|dbj|BAC42861.1| unknown protein [Arabidopsis thaliana]
425.0 [0..1] [371..1]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLISKSLAR IECSPFFYPR ASEITTGKRI TSPQIRLYTA AAVGGKTGNG ERKQRAKAPA  60
   61 KTPEAVTPVK PLEIASVTAT TENELPRPNE IAYESEVANW VNLIGFVDQP VQFEASSDGK 120
  121 FWAGTVISQR SASDSSGFWI PIIFEGDLAK TAARYVSKDD QIHVSGKLFI DSPPPNMTYA 180
  181 QANVQVLVQN LNFIQPMSPS PSPFMVMSSS EKEESGIKKQ PARAKQDIVI DEASDSWNHL 240
  241 IENPKEWWD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1se8A
Description: Structure of single-stranded DNA-binding protein (SSB) from D. radiodurans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [250-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRENKVNGLV KPRHPDFKSK DSSFSLWLNK APNWVLPKLE GLEFDVLVPK ARVVKQLKGE  60
   61 ESWKDLVQNP DKWWDNRIDK RNAKAPDFKH KETGEALWLN ESPTWVLPKL PPVKKKQESI 120
  121 VF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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