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View Structure Prediction Details

Protein: GCSP1_ARATH
Organism: Arabidopsis thaliana
Length: 1037 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GCSP1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERARRLAYR GIVKRLVNDT KRHRNAETPH LVPHAPARYV SSLSPFISTP RSVNHTAAFG  60
   61 RHQQTRSISV DAVKPSDTFP RR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNSATPDEQT HMAKFCGFDH IDSLIDATVP KSIRLDSMKF SKFDAGLTES QMIQHMVDLA  60
   61 SKNKVFKSFI GMGYYNTHVP TVILRNIMEN PAWYTQYTPY QAEISQGRLE SLLNFQTVIT 120
  121 DLTGLPMSNA SLLDEGTAAA EAMAMCNNIL KGKKKTFVIA SNCHPQTIDV CKTRADGFDL 180
  181 KVVTSDLKDI DYSSGDVCGV LVQYPGTEGE VLDYAEFVKN AHANGVKVVM ATDLLALTVL 240
  241 KPPGEFGADI VVGSAQRFGV PMGYGGPHAA FLATSQEYKR MMPGRIIGIS VDSSGKQALR 300
  301 MAMQTREQHI RRDKATSNIC TAQALLANMA AMYAVYHGPA GLKSIAQRVH GLAGIFSLGL 360
  361 NKLGVAEVQE LPFFDTVKIK CSDAHAIADA ASKSEINLRV VDSTTITASF DETT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.0
Match: 1wytA
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [497-1037]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLDDVDKLFK VFASGKPVPF TAESLAPEVQ NSIPSSLTRE SPYLTHPIFN MYHTEHELLR  60
   61 YIHKLQSKDL SLCHSMIPLG SCTMKLNATT EMMPVTWPSF TDIHPFAPVE QAQGYQEMFE 120
  121 NLGDLLCTIT GFDSFSLQPN AGAAGEYAGL MVIRAYHMSR GDHHRNVCII PVSAHGTNPA 180
  181 SAAMCGMKII TVGTDAKGNI NIEEVRKAAE ANKDNLAALM VTYPSTHGVY EEGIDEICNI 240
  241 IHENGGQVYM DGANMNAQVG LTSPGFIGAD VCHLNLHKTF CIPHGGGGPG MGPIGVKNHL 300
  301 APFLPSHPVI PTGGIPQPEK TAPLGAISAA PWGSALILPI SYTYIAMMGS GGLTDASKIA 360
  361 ILNANYMAKR LEKHYPVLFR GVNGTVAHEF IIDLRGFKNT AGIEPEDVAK RLMDYGFHGP 420
  421 TMSWPVPGTL MIEPTESESK AELDRFCDAL ISIREEIAQI EKGNADVQNN VLKGAPHPPS 480
  481 LLMADTWKKP YSREYAAFPA PWLRSSKFWP TTGRVDNVYG DRKLVCTLLP EEEQVAAAVS 540
  541 A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.30103
Match: 1wytB
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle