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View Structure Prediction Details

Protein: gi|6735315, gi|1...
Organism: Arabidopsis thaliana
Length: 240 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6735315, gi|1....

Description E-value Query
Range
Subject
Range
gi|240255663, gi... - gi|51972142|gb|AAU15175.1| At3g57360 [Arabidopsis thaliana], gi|50198814|gb|AAT70440.1| At3g57360 [A...
298.0 [0..1] [240..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKDWEASS SSENEGGFPN DDDEEFHSGG SVPKLQFRVG SSKARWITEL GMAEVEVKRG  60
   61 KLWTTTGIIR SGKTYCFIEE ALYLSEIGEL QILGNEDDIV IPLKDLYEKI AEEKSVALGK 120
  121 TTRHGVSWTL KDAARPNGEE ESACAGECPA DNDTVTKLLG DM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1a79A
Description: tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [163-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QICDAKAVFD VYLPNSRFKK SSPGEPSFVA CFSGDSPPSK EDIKVLQKRI AAPLTFCHIA  60
   61 QGRASFFSFS SIDLPVLS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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