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View Structure Prediction Details

Protein: gi|15229268, gi|...
Organism: Arabidopsis thaliana
Length: 830 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15229268, gi|....

Predicted Domain #1
Region A:
Residues: [1-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSISPSIF LHVAVTTEWT RNERWSLKDL ALIWGKIDDE DGVPPVTTEA TKKDLKTVKG  60
   61 VVHKSFRDAV FALGLLDDDK EYINAIKDAN FWCSAKYVRR LFVIMLLSES LTKPEMVWDE 120
  121 TWRILSKDIE HLQLSDEERQ QYCLQEIARL LTKNGVSLSK WNRCHKFQMN TMVDYGDFRA 180
  181 KKIYDEIMDV VLHDRGGVFF VYGFGGTGKT FLWKLLSAAV RSKGDISLNV ASSGIAALRL 240
  241 DGGRTAHSRF DIPINPNESS TCNISRGSDL GELVKEAKLI IWDEAPMMSK HCFESLDRTL 300
  301 KDIVNNPGDK PLGGKVIVFG GDFRQVLPVI NGAGREEIVF AALNSSYIWE HSKVLELTKN 360
  361 MRLLADISEH EKRDIEDFSK WILDVGDGKI SQPNDGIALI DIPEEFLING DNDPVESIIE 420
  421 AVYGNTFMEE KDPKKTDYPQ YQGRAILCPT NEDVNSINEH MMRMLDGEER IYLSSDSIDP 480
  481 ADISSANNAA YLADFLNNVR VYGLPNHCLR LKVGCPVMLL RNMDPNKGLC NGTRLQVTQM 540
  541 TDTIIQARFI TAFAMTINKS QGQTLESVGL YLPRPVFSHG QLYVAISRVT SKTIGCPVML 600
  601 LRNMDPNKGL CNGTRLQVTQ M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.39794
Match: 3e1sA
Description: No description for 3e1sA was found.

Predicted Domain #2
Region A:
Residues: [622-702]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADTVIQARFI TGNRVGKIVL IPRMLITPSD TRLPFKMRRK QFALSVAFAM TINKSQGQTL  60
   61 ESVGLYLPRP VFSHGQLYVA I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [703-830]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRVTSKTVGC PVMLLRNMDP NKGLCNGTRL QVTQMADTVI QARFITGNRV GKIVLIPRML  60
   61 ITPLDTRLPF KMRRKQFALS VAFAMTINKS QGQTLESVGL YLPRPVFSHG QLYVAISRVT 120
  121 SKTGTKFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle