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View Structure Prediction Details

Protein: gi|15234213, gi|...
Organism: Arabidopsis thaliana
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15234213, gi|....

Description E-value Query
Range
Subject
Range
gi|73952528 - gi|73952528|ref|XP_857065.1| PREDICTED: similar to ARV1 homolog isoform 2 [Canis familiaris]
237.0 [0..29] [250..41]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVITRIKD PIEKERDNSH RHREMAREKK TCVECGHKVK SLFIQYSPGN FRLMKCENCE  60
   61 EVADEYVECE LLIIFIDLIL HKTKAYRHLL YNVVNQESAN VQHLLWKLVL AYLLLDTY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.951
Match: 2bq4A
Description: Crystal structure of type I cytochrome c3 from Desulfovibrio africanus
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [119-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSLLLRRTND GSNVSMSFLF ESLEVLVNVL SANFAFVFSF AFAAKLMLVM PRGKEILLTI  60
   61 LISSYVKIFL FAMPVWEFPV SVIFIVDMLV LTSNAVALKV MTESATSRCL AVCFIAHSIR 120
  121 FLVDQISGHL GSVM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 23.045757
Match: PF04161.4
Description: No description for PF04161.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle