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View Structure Prediction Details

Protein: gi|15232347, gi|...
Organism: Arabidopsis thaliana
Length: 487 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15232347, gi|....

Description E-value Query
Range
Subject
Range
gi|68355286 - gi|68355286|ref|XP_685556.1| PREDICTED: similar to hect domain and RLD 4 (predicted) [Danio rerio]
387.0 [0..6] [482..36]

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Predicted Domain #1
Region A:
Residues: [1-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGNIVGKVP IGECKATVVY MSGYLPGAAS EKSPILSPVP VRLSAAVHGG DSWKDVCGGG  60
   61 CGFAMAISEK GKLITWGSTD DEGQSYVASG KHGETPEPFP LPTEAPVVQA SSGWAHCAVV 120
  121 TETGEAFTWG WKECIPSKDP VGKQQSGSSE QGDIASQGSN AASGTTLQNE NQKVGEESVK 180
  181 RRRVSTAKDE TEGHTSGGDF FATTPSLVSV GLGVRITSVA TGGRHTLALS VEDSFEDDHV 240
  241 FTEVSDLGQI WGWGYGGEGQ LGLGSRIKMV SSPHLIPCLE SIGSGKERSF ILHQGGTTTT 300
  301 SAQASREPGQ YIKAISCGGR HSAAITDAGG LITFGWGLYG QCGHGNTNDQ LRPMAVSEVK 360
  361 SVRMESVAAG LWHTICISSD GKVYAFGGNQ FGQLGTGTDH AEILPRLLDG QNLEGKHAKA 420
  421 VSCGARHSAV LAEDGQLLCW GWNKYGQLGL GDTNDRNIPT QVQLDGCRLR KVACGWWHTL 480
  481 LLGDSPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.154902
Match: 1a12A
Description: Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle