YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5823576, gi\|2...
Organism:	Arabidopsis thaliana
Length:	527 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5823576, gi|2....

Description	E-value	Query Range	Subject Range
TMN7_ARATH - Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1	656.0	[0..1]	[527..132]
gi\|114650498 - gi\|114650498\|ref\|XP_001147580.1\| PREDICTED: transmembrane 9 superfamily member 2 isoform 3 [Pan trog... TM9SF2 - transmembrane 9 superfamily member 2	647.0	[0..2]	[527..155]
gi\|73989439 - gi\|73989439\|ref\|XP_534172.2\| PREDICTED: similar to Transmembrane 9 superfamily protein member 2 prec...	646.0	[0..2]	[527..154]
TM9S2_PONPY - Transmembrane 9 superfamily protein member 2 precursor - Pongo pygmaeus (Orangutan) TM9S2_PONAB - Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	646.0	[0..2]	[527..155]
gi\|50730617 - gi\|50730617\|ref\|XP_416972.1\| PREDICTED: hypothetical protein [Gallus gallus]	645.0	[0..2]	[527..143]
gi\|53791995, gi\|... - gi\|53793336\|dbj\|BAD54557.1\| putative PHG1A protein [Oryza sativa Japonica Group], gi\|53791995\|dbj\|BA...	642.0	[0..1]	[527..139]
TM9S2_RAT - Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	640.0	[0..2]	[527..155]
TM9S2_MOUSE - Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=1 SV=1	639.0	[0..2]	[527..154]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILDNLPALR FAKQNGVTIQ WTGYPVGYSP PNSNDDYIIN HLKFKVLVHE YEGNVMEVIG  60
   61 TGEEGMGVIS EADKKKALGY EIVGFEVVPC SVKYDAEKMT K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHMYDPVPSV NCPLELDKAQ IIKEHERITF TYEVEFVKSE TRWPSRWDAY LKMEGARVHW  60
   61 FSILNSLMVI FFLAGIVFVI FLRTVRRDLT KYEELDKEAQ AQMNEELSGW KLVVGDVFRE 120
  121 PEMSKLLCIM VGDGVRITGM AVVTIVFAAL GFMSPASR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [260-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMLLTGMIIL YLFLGIVAGY AGVRLWRTVK GTSEGWRSLS WSIACFFPGI AFVILTVLNF  60
   61 LLWSSNSTGA IPISLYFELL ALWFCISVPL TLFGGFLGTR AEAIQFPVRT NQIPREIPER 120
  121 KYPSWLLVLG AGTLPFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [397-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLFIELFFIF SSIWLGRFYY VFGFLLIVLL LLVVVCAEVS VVLTYMHLCV EDWRWWWKAF  60
   61 YASGSVALYV FAYSINYLVF DLQSLSGPVS AMLYIGYSLL MAIAIMLATG TIGFLTSFYF 120
  121 VHYLFSSVKI D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits