YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GT643_ARATH
Organism: Arabidopsis thaliana
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GT643_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536680 - gi|21536680|gb|AAM61012.1| unknown [Arabidopsis thaliana]
406.0 [0..1] [329..1]

Back

Predicted Domain #1
Region A:
Residues: [1-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVKSVRFSI WFLFVVTDLV FCRTLSGDPD PCDATNQREF QKLRSDQITV LINGYSEYRI  60
   61 PLLQTIVASY SSSSIVSSIL VLWGNPSTPD QLLDQLYQNL TQYSPGSASI SLIQQSSSSL 120
  121 NARFLPRSSV DTRAVLICDD DVEIDQRSLE FAFSVWKSNP DRLVGTFVRS HGFDLQGKEW 180
  181 IYTVHPDKYS IVLTKFMMMK QDYLFEYSCK GGVEMEEMRM IVDQMRNCED ILMNFVAADR 240
  241 LRAGPIMVGA ERVRDWGDAR NEEVEERVRD VGLSSRRVEH RKRRGNCIRE FHRVMGKMPL 300
  301 MYSYGKVVNS VGEQGLCRKA GKLVFCDRD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.69897
Match: 1omxA
Description: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle