| Protein: | gi|11358123, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1755 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358123, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
1050.0 | [0..68] | [1511..1000] |
|
Region A: Residues: [1-513] |
1 11 21 31 41 51
| | | | | |
1 MSNPSSSGLG SSSGLTHFGI GLANTVQSEV TPYLPLPSLP IFCGAAEPGE FKLFDEVGQG 60
61 SGYRSLDRSE ILAQSSRIAN MLHETDVSYL DLRNEARAPD CNSGEHFQLY DLVLRCNPGA 120
121 FEYVTPGPTC DPLFTNEGPQ KIISEPSVPV KMQRQTDTHL ARSIEPEPVK RVLRPNHVED 180
181 HSWQHETLTN QSPKDVTAYD SRPETITMNE LSASKKPKGK KKRKDDLSSV QPDPSVLQES 240
241 IVQNFCEMLE DFCGRAEVPG DDRDEAEWSS VPVDEVRVLI NELMTIRSKM LLHMVPVDIL 300
301 SRLLRTLDHQ IHRAEGLSIY SEHSDSDSVL LVLGALESIH ASLAVMANSD MPKQLYKEEI 360
361 IERILEFSRH QMMAVMSAYD PSYRTGSKPA ENLAFEGDDD DDNPDHDMGS ASKRRRIVKN 420
421 SKVKKASVNS KYCTTETLHY SWLTQGPVVG RKLPSSKRAL RAYLLPDEEQ RQIQMVTALL 480
481 IQLVHNSTSL PETSRQAASG NSILETSVDV GYL
|
| Detection Method: |  |
| Confidence: | 1.1 |
| Match: | 1pjrA |
| Description: | STRUCTURE OF DNA HELICASE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.412582209182696 | bayes_pls_golite062009 |
|
Region A: Residues: [514-701] |
1 11 21 31 41 51
| | | | | |
1 TKCHEAATET CCLFWTRVLE RFTSFKGQDA SEIKLIIENL VMDLLTALNL PEYPSVSPIL 60
61 EVLCVILLHN AGLKSKDVSA RIMAIELLGT IAARLKRDAV LCSKDRFWTL LESDSEISVD 120
121 QELDISSRNW HCPLCVCKRQ LLVLQSYCKT DTKGTGKLES EESIENPSMI TKTEVVQQML 180
181 LNYLQDVG
|
| Detection Method: | |
| Confidence: | 26.39794 |
| Match: | 1u6gC |
| Description: | Crystal Structure of The Cand1-Cul1-Roc1 Complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [702-1451] |
1 11 21 31 41 51
| | | | | |
1 SADDVHTFIC WFYLCLWYKD VPKSQNKFKY YIARLKAKSI IRNSGATTSF LTRDAIKQIT 60
61 LALGMNSSFS RGFDKILNML LASLRENAPN IRAKALRAVS IIVEADPEVL CDKRVQLAVE 120
121 GRFCDSAISV REAALELVGR HIASHPDVGI KYFEKVAERI KDTGVSVRKR AIKIIRDMCT 180
181 SNPNFSEFTS ACAEILSRIS DDESSVQDLV CKTFYEFWFE EPPGHHTQFA SDASSIPLEL 240
241 EKKTKQMVGL LSRTPNQQLL VTIIKRALAL DFFPQAAKAA GINPVALASV RRRCELMCKC 300
301 LLEKILQVEE MSREEGEVQV LPYVLVLHAF CLVDPGLCTP ASDPTKFVIT LQPYLKSQAD 360
361 SRTGAQLLES IIFIIDSVLP LIRKLPLSVT EDLEQDLKHM IVRHSFLTVV HACVSKLAGK 420
421 GVSIVEHLLQ FFFKRLEAQG SDNTQIAGRS LFCLGLLIRH GNSLISTSGG KNFNLSGCLN 480
481 LFKRHLRTED IALKVRSLQA LGFILIARPE YMLEEDIGKI IETTLADEAN GRMKMQALQN 540
541 MYEYLLDAEK QLGSEKASDN TVNSVEQGGH NVPVAAGAGD TNICGGIVQL FWDKILGRCL 600
601 DFDDQIRQTS LKIVEVVLRQ GLVHPITCVP YLIALETDPQ EANQKLAHHL LMNMHEKYPA 660
661 FFESRLGDGL QMSFIFMQSI SQVTSEPNQS LQQKGSTNML GKNDHASSTL TQARLGVSRI 720
721 YKLIRGNRVS RNKFMTSIVR KFDNPTWNGS
|
| Detection Method: | |
| Confidence: | 86.39794 |
| Match: | 2h4mA |
| Description: | No description for 2h4mA was found. |
|
Region A: Residues: [1452-1594] |
1 11 21 31 41 51
| | | | | |
1 VISFLKYCTE TLALLPFTSP DEPLYLVYSI NRVMQIRAGA VESNLKALLH KDSAKTQHGN 60
61 GAYQQDPIPG HMNMMDLNTR IQEEPRHWNS YGHATLIDLN GSVYQDSRDQ FTSYQVHNGK 120
121 ADVHKMTSSD PPELSTDDLQ KIQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1595-1755] |
1 11 21 31 41 51
| | | | | |
1 VVFMAFSPVM LRVDCLAAIA IQLLLKLKRY LKVTYSLNDD RCQAYSPTEP LKPGDPLSRQ 60
61 SVAFDLSETR TDLPSTYQDL VQRYQEFKNA MREDTVDFTI YSTNVKRKRP TPRKTSRSAK 120
121 KTVAYNEDDD DDDNDDRGWH GGGGRGAARR LNYSTRSSNR R
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
