YRC Public Data Repository - Protein Structure Prediction

Protein:	TLP10_ARATH
Organism:	Arabidopsis thaliana
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLP10_ARATH.

Description	E-value	Query Range	Subject Range
TLP1_ARATH - Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1	659.0	[0..1]	[445..1]
gi\|125552479 - gi\|125552479\|gb\|EAY98188.1\| hypothetical protein OsI_20103 [Oryza sativa Indica Group] TLP8_ORYSJ - Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1	657.0	[0..1]	[445..1]
gi\|5777631 - gi\|5777631\|emb\|CAB53492.1\| CAA303719.1 protein [Oryza sativa] gi\|90399022, gi\|... - gi\|90399022\|emb\|CAJ86142.1\| H0701F11.8 [Oryza sativa (indica cultivar-group)], gi\|116311976\|emb\|CAJ8...	652.0	[0..1]	[445..1]
gi\|28188619, gi\|... - gi\|28188623\|gb\|AAN46237.1\| unknown protein [Arabidopsis lyrata], gi\|28188621\|gb\|AAN46236.1\| unknown ...	644.0	[0..18]	[432..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA  60
   61 NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM CQEIVLGPEI CGKLTFPVSL 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.77
Match:	2e31A
Description:	No description for 2e31A was found.

Predicted Domain #2

Region A:
Residues: [121-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD  60
   61 ADNISRSSNS YLGKLRSNFL GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP 120
  121 SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF 180
  181 RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL 240
  241 NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP EQDKVILQFG KVGKDMFTMD 300
  301 YRYPLSAFQA FAICLSSFDT KLACE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1c8zA
Description:	Transcriptional factor tubby, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits