| Protein: | gi|15225742, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 333 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15225742, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
367.0 | [0..2] | [333..8] |
|
|
242.0 | [0..22] | [317..5] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MVMKIAIATE RTDLPRLVST AIRASNSQNA SDVERCFDVL RYLKGLNLSV KNLSHSKVIL 60
61 PLESLRDHEN PKIRTEAHVL FTSWMKTFYS SGQNSSSTCN KPNPLKLKKV VKACSELKKK 120
121 NEEQLSHGFA VLKAKKETVF LGMKKNEDER SRVHETREMK
|
| Detection Method: |  |
| Confidence: | 2.82 |
| Match: | 1pqvS |
| Description: | RNA polymerase II-TFIIS complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [161-233] |
1 11 21 31 41 51
| | | | | |
1 QIGDSKSFAL MRTIEKKKQS ASPIQGSKNP RSGAGETGVI KKILRKPDFC CKSVPSRPPL 60
61 NMKKHQPVKA FEN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.683 | a.65.1 | Annexin |
| View | Download | 0.683 | a.65.1 | Annexin |
| View | Download | 0.543 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.543 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.403 | a.251.1 | Description not found. |
| View | Download | 0.391 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.332 | c.47.1 | Thioredoxin-like |
| View | Download | 0.312 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.284 | a.64.2 | Bacteriocin AS-48 |
|
Region A: Residues: [234-333] |
1 11 21 31 41 51
| | | | | |
1 PKTCLVLKKN SPEMLELFEM AKKSADVANA KGFLAAKEEA SICVDILALL MKFSIISTAI 60
61 ETRRIMEKLE RLTKHKDRKI CNAALALLHH WRQTIRNQQQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.937 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.937 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.919 | N/A | N/A | a.48.4 | Description not found. |
| View | Download | 0.902 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.902 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.882 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.878 | N/A | N/A | a.48.4 | Description not found. |
| View | Download | 0.860 | N/A | N/A | a.74.1 | Cyclin-like |
