YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11357819, gi\|...
Organism:	Arabidopsis thaliana
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357819, gi|....

Description	E-value	Query Range	Subject Range
gi\|194122600, gi... - gi\|195348921\|ref\|XP_002040995.1\| GM15290 [Drosophila sechellia], gi\|194122600\|gb\|EDW44643.1\| GM15290... CG7998-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7998 (CG7998, FBgn0038587). It is a protein... gi\|220960460 - gi\|220960460\|gb\|ACL92766.1\| CG7998-PA [synthetic construct]	125.0	[0..6]	[94..250]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRNSDPYA MISFLKSLIR ALDGDDDVFD FAFVASSVTE LPYFATRTKI GKKRIEEVID  60
   61 SDLQGLAKYE ERAIKAIKPR VKVTIEKDIT LLQRTFVAIS VYKLLIVV

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Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1mldA
Description:	Malate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.14023531388481	bayes_pls_golite062009
oxidoreductase activity	0.35135191441759	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.289188075300681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: