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View Structure Prediction Details

Protein: RZ1A_ARATH
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RZ1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|73990618 - gi|73990618|ref|XP_853786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...
128.0 [0..1] [244..121]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA  60
   61 MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR DRGYDRDRSR PSGGRGGGDC 120
  121 FKCGKPGHFA R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.30103
Match: 2cjkA
Description: No description for 2cjkA was found.

Predicted Domain #2
Region A:
Residues: [132-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECPSESSRDG GGRFSSKDDR YSSKDDRYGA KDDRYGAKED RYGAKDDRYS SKDDRYSSKD  60
   61 DRYGSRDGGG SRYGPDRSGE RAGGRSRDGG SRGAPGGERH SRAPYDRPRA GGFH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle