YRC Public Data Repository - Protein Structure Prediction

Protein:	YMG12_ARATH
Organism:	Arabidopsis thaliana
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMG12_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21592772 - gi\|21592772\|gb\|AAM64721.1\| unknown [Arabidopsis thaliana]	166.0	[0..1]	[218..1]
gi\|126519298, gi... - gi\|229509067\|ref\|ZP_04398555.1\| hypothetical protein VCE_000470 [Vibrio cholerae B33], gi\|229353992\|... gi\|9654884, gi\|1... - gi\|9654884\|gb\|AAF93632.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|254846395, gi... - gi\|75829100\|ref\|ZP_00758417.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae MO10], ... gi\|11278889 - pir\|\|C82321 conserved hypothetical protein VC0459 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|229606247, gi... - gi\|229606247\|ref\|YP_002876895.1\| hypothetical protein VCD_001148 [Vibrio cholerae MJ-1236], gi\|22936... gi\|229344424, gi... - gi\|229519735\|ref\|ZP_04409178.1\| hypothetical protein VCC_003767 [Vibrio cholerae RC9], gi\|229344424\|...	129.0	[0..42]	[218..1]
gi\|28807628, gi\|... - gi\|28899392\|ref\|NP_798997.1\| FkuB [Vibrio parahaemolyticus RIMD 2210633], gi\|28807628\|dbj\|BAC60881.1... gi\|28807628 - gi\|28807628\|dbj\|BAC60881.1\| FkuB [Vibrio parahaemolyticus RIMD 2210633]	128.0	[0..42]	[218..1]
gi\|109702302, gi... - gi\|76794723\|ref\|ZP_00777184.1\| Protein of unknown function YGGT [Pseudoalteromonas atlantica T6c], g...	128.0	[0..42]	[218..1]
gi\|37199810, gi\|... - gi\|37681060\|ref\|NP_935669.1\| integral membrane protein [Vibrio vulnificus YJ016], gi\|37199810\|dbj\|BA...	128.0	[0..42]	[218..1]
gi\|75825860, gi\|... - gi\|75825860\|ref\|ZP_00755295.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae O395], ... gi\|75815263, gi\|... - gi\|75815263\|ref\|ZP_00745781.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae V52], g... gi\|227080669, gi... - gi\|227080669\|ref\|YP_002809220.1\| hypothetical protein VCM66_0444 [Vibrio cholerae M66-2], gi\|2270085... gi\|116219736, gi... - gi\|75819185\|ref\|ZP_00749278.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae V51], g... gi\|229350414, gi... - gi\|229512521\|ref\|ZP_04401992.1\| hypothetical protein VCB_000161 [Vibrio cholerae TMA 21], gi\|2293504... gi\|229355842, gi... - gi\|229507097\|ref\|ZP_04396603.1\| hypothetical protein VCF_002319 [Vibrio cholerae BX 330286], gi\|2293... gi\|229519845, gi... - gi\|229519845\|ref\|ZP_04409279.1\| hypothetical protein VIF_000359 [Vibrio cholerae TM 11079-80], gi\|22... gi\|121547456, gi... - gi\|121590725\|ref\|ZP_01678057.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215474... gi\|153224219, gi... - gi\|153224219\|ref\|ZP_01954302.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241177... gi\|124114358, gi... - gi\|153216269\|ref\|ZP_01950362.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114358\|... gi\|153819169, gi... - gi\|153819169\|ref\|ZP_01971836.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|124121868, gi... - gi\|153802605\|ref\|ZP_01957191.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121868... tr\|A0A085QX74\|A0... - YGGT family protein OS=Vibrio cholerae GN=DA89_1909 PE=4 SV=1, Uncharacterized protein OS=Vibrio cho... gi\|254291170, gi... - gi\|254291170\|ref\|ZP_04961966.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197751... gi\|149739667, gi... - gi\|153826575\|ref\|ZP_01979242.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149739667...	128.0	[0..42]	[218..1]
gi\|27364894, gi\|... - gi\|27364894\|ref\|NP_760422.1\| integral membrane protein [Vibrio vulnificus CMCP6], gi\|27361039\|gb\|AAO...	127.0	[0..42]	[218..1]
gi\|116216666, gi... - gi\|75823377\|ref\|ZP_00752883.1\| COG0762: Predicted integral membrane protein [Vibrio cholerae RC385],... tr\|D7HDG2\|D7HDG2... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03259 PE=4 SV=1	127.0	[0..42]	[218..1]
YPI3_VIBAL - Uncharacterized protein in proC 3'region OS=Vibrio alginolyticus PE=3 SV=1	127.0	[0..42]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFTTNSLA LRASILANPR LPPPIIRPRL SLPRKLSFNL SLHNARTIVS SAVTSSSPVL  60
   61 SSKPPSQFPF SDSTRSITTL VLLAGVVIKS LIQKLSVAIV NLSPQIQASF RTASPLFFAS 120
  121 LRDRPAGY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.688	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.683	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.683	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.635	N/A	N/A	a.48.1	N-terminal domain of cbl (N-cbl)
View	Download	0.634	N/A	N/A	f.21.2	Fumarate reductase respiratory complex transmembrane subunits
View	Download	0.634	N/A	N/A	f.21.2	Fumarate reductase respiratory complex transmembrane subunits
View	Download	0.626	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.623	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.534	N/A	N/A	a.48.1	N-terminal domain of cbl (N-cbl)
View	Download	0.520	N/A	N/A	a.25.1	Ferritin-like

Predicted Domain #2

Region A:
Residues: [129-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNTPLTVVAA GLSKWLDIYS GVLMVRVLLS WFPNIPWDRQ PLSAIRDLCD PYLNLFRNII  60
   61 PPVFDTLDVS PLLAFAVLGT LGSILNNSRG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.387216
Match:	PF02325.8
Description:	No description for PF02325.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.992	N/A	N/A	a.7.7	BAG domain
View	Download	0.978	N/A	N/A	a.7.7	BAG domain
View	Download	0.975	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.971	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.868	N/A	N/A	a.7.8	GAT domain
View	Download	0.867	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.867	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.842	N/A	N/A	a.112.1	Description not found.
View	Download	0.828	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.828	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.825	N/A	N/A	a.24.3	Cytochromes
View	Download	0.806	N/A	N/A	a.7.8	GAT domain
View	Download	0.672	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.612	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits