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View Structure Prediction Details

Protein: ROGF9_ARATH
Organism: Arabidopsis thaliana
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGF9_ARATH.

Description E-value Query
Range
Subject
Range
ROGF8_ARATH - Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1
777.0 [0..1] [517..1]
gi|92874517 - gi|92874517|gb|ABE82772.1| Protein of unknown function DUF315 [Medicago truncatula]
732.0 [0..1] [517..1]
gi|215701461, gi... - gi|51854259|gb|AAU10640.1| unknown protein [Oryza sativa Japonica Group], gi|222632538|gb|EEE64670.1...
714.0 [0..22] [517..45]
gi|57869094 - gi|57869094|gb|AAW57535.1| pollen-specific kinase partner protein [Lycopersicon esculentum]
697.0 [0..67] [517..48]

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Predicted Domain #1
Region A:
Residues: [1-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT  60
   61 SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS ALALSNAITN LAASIFGEQT 120
  121 KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA 180
  181 LRKLDAMLID TLDNFRGHNE FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR 240
  241 RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD 300
  301 PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE 360
  361 TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI LESLGYTEMS RIDDVLYADS 420
  421 LARKQCTGEE TSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2ntxA
Description: No description for 2ntxA was found.

Predicted Domain #2
Region A:
Residues: [434-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGKIATETDS ASAGSSNYSG EEIEKLESQN SSKTTLLDFI GWSDNSSKGQ SEKPPKSPRM  60
   61 TPKKLSYLEK LENLNGFRSP KDRH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle