YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: VP371_ARATH
Organism: Arabidopsis thaliana
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VP371_ARATH.

Description E-value Query
Range
Subject
Range
VP372_ARATH - Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=...
182.0 [0..1] [217..1]

Back

Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNFWGSKDQ QQGQSRPQEA SSQSPWYSPS LVSSPSSSRP QSSGQISAQV SPGEAAGIIV  60
   61 FLKDKSVDEL RKLLSDKDAY QQFLLSLDQV KVQNNIKDEL RRETLQLARD NLEKEPQIME 120
  121 LRNQCRIIRT TELATAQEKL NELERQKEEI LKFYSPGSLL HKLQEAMNQV DEESEALQEK 180
  181 FLEKEIDTAA FVQKYKKLRT TYHRRALIHL AAKTSNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle