YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7268077, gi|7...
Organism: Arabidopsis thaliana
Length: 449 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7268077, gi|7....

Description E-value Query
Range
Subject
Range
gi|28393508, gi|... - gi|42561701|ref|NP_171975.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana], gi|2897312...
321.0 [0..1] [449..1]

Back

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGIPEWL NSSLWSSSPP IDDRHLRNPA ATSITPPSPP IVERPPFSSS PSAISTAPAP  60
   61 PLPVRPPSKS EINDLQNGSG NDGAGIETPA V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSVEDVSRKA QVVAELSKKV IDLKELRKIA SQGLPDDAGI RSIVWKLLLD YLSPDRSLWS  60
   61 SELAKKRSQY KQFKEELLMN PSEVTRKMDK SKGGDSNDPK IESPGALSRS EITHEDHPLS 120
  121 LGTTSLWNNF FKDTEVLEQI ERDVMRTHPD MHFFSGDSAV AKSNQDALKN ILTIFAKLNP 180
  181 GIRYVQGMNE ILAPIFYIFK NDPDKGNAAY AESDAFFCFV ELMSGFRDNF CQQLDNSVVG 240
  241 IRYTITRLSL LLKHHDEELW RHLEVTTKIN PQFYAFRWIT LLLTQEFNFV ESLHIWDTLL 300
  301 SDPEGPQETL LRICCAMLIL VRRRLLAGDF TSNLKLLQNY PPTNISHMLY VADKLRTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.69897
Match: 2qfzA
Description: No description for 2qfzA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle