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View Structure Prediction Details

Protein: gi|7447850, gi|5...
Organism: Arabidopsis thaliana
Length: 971 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|7447850, gi|5....

Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFPFHLSSQ IFFSFTFCAA PEKMDKSSTM LVHYDKGTPA VANEIKEALE GNDVEAKVDA  60
   61 MKKAIMLLLN G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-883]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETIPQLFITI IRYVLPSEDH TIQKLLLLYL ELIEKTDSKG KVLPEMILIC QNLRNNLQHP  60
   61 NEYIRGVTLR FLCRMKETEI VEPLTPSVLQ NLEHRHPFVR RNAILAIMSI YKLPQGDQLF 120
  121 VDAPEMIEKV LSTEQDPSAK RNAFLMLFTC AEERAVNYLL SNVDKVSDWN ESLQMVVLEL 180
  181 IRSVCKTKPA EKGKYIKIII SLLSATSSAV IYECAGTLVS LSSAPTAIRA AANTYCQLLL 240
  241 SQSDNNVKLI LLDRLYELKT LHRDIMVELI IDVLRALSSP NLDIRRKTLD ISLDLITHHN 300
  301 INEVVQMLKK EVVKTQSGEL EKNGEYRQML IQAIHACAVK FPEVASTVVH LLMDFLGDSN 360
  361 VASALDVVVF VREIIETNPK LRVSIITRLL DTFYQIRAGK VCPCALWIIG EYCLSLSEVE 420
  421 SGISTITQCL GELPFYSVSE ESEPTETSKK IQPTSSAMVS SRKPVILADG TYATQSAASE 480
  481 TTFSSPTVVQ GSLTSGNLRA LLLTGDFFLG AVVACTLTKL VLRLEEVQSS KTEVNKTVTQ 540
  541 ALLIMVSMLQ LGQSPVSPHP IDNDSYERIV LCIKLLCHRN DEMKKIWLES CRQSFVKMIS 600
  601 EKQLREMEEL KAKTQTTHAQ PDDLIDFFHL KSRKGMSQLE LEDQVQDDLK RATGEFTKDE 660
  661 NDANKLNRIL QLTGFSDPVY AEAYVTVHHY DIALEVTVIN RTKETLQNLC LELATMGDLK 720
  721 LVERPQNYSL APERSMQIKA NIKVSSTETG VIFGNIVYET SNVMERNVVV LNDIHIDIMD 780
  781 YISPAVCSEV AFRTMWAEFE WENKVAVNTT IQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.522879
Match: 2h4mA
Description: No description for 2h4mA was found.

Predicted Domain #3
Region A:
Residues: [884-971]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEREFLDHII KSTNMKCLTA PSAIEGECGF LAANLYAKSV FGEDALVNVS IEKQTDGALS  60
   61 GYIRIRSKTQ GIALSLGDKI TLKQKGSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.09691
Match: 1ky6A
Description: Alpa-adaptin AP2 ear domain, N-terminal subdomain; Alpa-adaptin AP2, C-terminal subdomain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle