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View Structure Prediction Details

Protein: gi|15235093, gi|...
Organism: Arabidopsis thaliana
Length: 301 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15235093, gi|....

Description E-value Query
Range
Subject
Range
gi|82703356, gi|... - gi|82703356|ref|YP_412922.1| heat shock protein DnaJ [Nitrosospira multiformis ATCC 25196], gi|82411...
227.0 [0..47] [299..6]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIAEKKLSK NDYDGAKTFI SKAQALYPKL DGLEQVVMMI DVYISASNKI NGEADWYGIL  60
   61 GIDPLADEEA VKKQYKKLAL LLHPDKNRFN GAEGAFKLVR HARDLLSDQP CLIYNVQGQT 120
  121 QTQKSQNHTR TRTCVAYDHK RKPKQVKRKR SRTQDPPKPH KYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [164-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKYEFRKRNR MHKPHEYAYE YTSDSSESDP EPDSSWKQKK PRKQEEDITF WTVCKNNKCN  60
   61 THCKLGKAEV IPEMKYGRPV YSFNAKFQPT SKSTSDASSS STTSTSDTAN EAQDRESSQE 120
  121 EFVPANASPA ARGDANEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.154902
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle