YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUA6_ARATH
Organism:	Arabidopsis thaliana
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|56202717, gi\|... - gi\|56202717\|emb\|CAI19953.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Homo sapie... gi\|109451994, gi... - gi\|109451994\|emb\|CAK54859.1\| NDUFA6 [synthetic construct], gi\|109451398\|emb\|CAK54560.1\| NDUFA6 [synt... ENSPTRT00000026990 - null	174.0	[0..3]	[130..35]
gi\|149065780, gi... - gi\|27663138\|ref\|XP_235518.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	173.0	[0..3]	[130..11]
gi\|27503953, gi\|... - gi\|41055750\|ref\|NP_957262.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 [Danio rerio], gi...	171.0	[0..3]	[130..9]
NDUA6_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2	171.0	[0..3]	[130..9]
gi\|73969393 - gi\|73969393\|ref\|XP_531712.2\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	170.0	[0..11]	[130..95]
gi\|109094394 - gi\|109094394\|ref\|XP_001106675.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subco...	169.0	[0..3]	[130..35]
gi\|60833616 - gi\|60833616\|gb\|AAX37056.1\| NADH dehydrogenase 1 alpha subcomplex 6 [synthetic construct]	169.0	[0..3]	[130..9]
NDUA6_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pongo abelii GN=NDUFA6 PE=2 SV=3 NDUA6_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pongo pygmaeus GN=NDUFA6 PE=2 SV=3	169.0	[0..3]	[130..9]
NDUA6_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pan troglodytes GN=NDUFA6 PE=2 SV=3 NDUFA6 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa gi\|111662330 - gi\|111662330\|gb\|ABH12239.1\| mitochondrial complex I subunit NDUFA6 [Gorilla gorilla] gi\|123989728, gi... - gi\|60655749\|gb\|AAX32438.1\| NADH dehydrogenase 1 alpha subcomplex 6 [synthetic construct], gi\|1239992... HGNC:7690\|MIM:60... - dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa NDUA6_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla GN=NDUFA6 PE...	168.0	[0..3]	[130..9]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS  60
   61 AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII GQYVVGEGLV QNTGNKDQGK 120
  121 TDFLKNFYTS NYF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.721246
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits