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View Structure Prediction Details

Protein: gi|15235439, gi|...
Organism: Arabidopsis thaliana
Length: 896 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15235439, gi|....

Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFSLWKQIH HCASLILDKS KSSRRRRDGS DSSLNVKKKA ALIRKLYEDK LREALEEASE  60
   61 NGSLFKSQDI DQDNGDGSLG RSRSLARLHA QREFLRATAL AAERIIESED SIPELREALT 120
  121 KFLSMYPKYQ ASEKIDQLRS DEYSHLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.045757
Match: 1js3A
Description: DOPA decarboxylase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [148-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSASKVCLDY CGFGLFSYVQ TLHYWDTCTF SLSEITANLS NHALYGGAES GTVEHDIKTR  60
   61 IMDYLNIPEN EYGLVFTVSR GSAFRLLAES YPFQSNKRLL TMFDHESQSV NWMAQTAREK 120
  121 GAKAYNAWFK WPTLKLCSTD LKKRLSYKKR KKKDSAVGLF VFPAQSRVTG TKYSYQWMAL 180
  181 AQQNHWHVLL DAGSLGPKDM DSLGLSLFRP EFIITSFYRV FGHDPTGFGC LLIKKSVMGS 240
  241 LQSQSGKTGS GIVKITPEYP LYLSDSVDGL DGLVGFEDHN DDKTKEAHRP GTQMPAFSGA 300
  301 YTSAQVRDVF ETELLEDNIS SDRDGTTSTT IFEETESVSV GELMKSPVFS EDESSDNSFW 360
  361 IDLGQSPLGS DQHNKIASPL PPIWLTNKRK QKQRQSPKPI PKSYSSPLYD GNDVLSFDAA 420
  421 VMSVTEHGTN STPSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 1jf9A
Description: NifS-like protein/selenocysteine lyase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [583-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRRSSSNHLH VQEIQEENCG HSFANGLKSS NISSEIKESA IRRETEGEFR LLGGRDGGRS  60
   61 RLLGVEDEHP SKGRRVSFNM 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [663-896]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERVSHSIVEP GEASLASVYD EDYINTSDVE NGDDEGADDE WDRRDTETEI VCRHIDHVNM  60
   61 LGLNKTTTRL RFLINWLVIS LLQLQVPESG GRHMNLVQIY GPKIKYERGA AVAFNVRDKS 120
  121 KGFVSPEIVQ RLGDREGVSL GIGILSHIRI VDEKPRNHRA RTKEDSALHL QNEAGKNGFI 180
  181 RFEVVTASLS FLTNFEDVYK LWVFVAKFLN PGFSREGSLP TVEEEEEEAE NSET

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle