YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7378632, gi|1...
Organism: Arabidopsis thaliana
Length: 321 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7378632, gi|1....

Description E-value Query
Range
Subject
Range
gi|73974162 - gi|73974162|ref|XP_857372.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
253.0 [0..14] [320..1]

Back

Predicted Domain #1
Region A:
Residues: [1-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESAIKRLK SLELNDSDKQ STSTAICVEG YDTSLKEYPL RLALTKHFAS CGEITQIYVP  60
   61 RDFKKKILKS VSFMWIKGEG AEDKALQLSG TDVGGWTVIV KPKPKHEPPS PITTISVEGY 120
  121 DTSLQKYLLE LILEKHFDSC GEIRHVYVPT DYERGVLKSV AFLRIEGEGA EDKALQLSGT 180
  181 DVVGWTVIVK PSEIFYDNSS RAPATTPEAS KIHRFRVTGY DASLPEIDIQ MALCKHFSSC 240
  241 GEIWQVTVLS STAFVSLRGE RCVDKALELS GCNMGERTLV VNEPVVPQPE LLKRKRVRHC 300
  301 TTTGYMPPGT WDKADADVYD E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.09691
Match: 2ghpA
Description: No description for 2ghpA was found.

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle