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View Structure Prediction Details

Protein: gi|13374873, gi|...
Organism: Arabidopsis thaliana
Length: 365 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13374873, gi|....

Description E-value Query
Range
Subject
Range
gi|46197629, gi|... - gi|46200002|ref|YP_005669.1| dihydrolipoamide dehydrogenase [Thermus thermophilus HB27], gi|46197629...
263.0 [0..12] [362..14]

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Predicted Domain #1
Region A:
Residues: [1-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGIESGSKQ GKRVVVIGGG IAGSLAAKLL QFDAEVTLID PKEYFEITWA SLRSMVEPKF  60
   61 AERTVINHKS YLKQGRLVTS PAINITESDV MTEDGSVIGY DYLVIATGHN DLFPKTRQEK 120
  121 LSHYQSEYEK IKSSGSVLIV GGGPSGVELA AEIAVDFPEK KVTLVHKGPR LLEFVGQKAA 180
  181 DKASDWLESK KVEVILNQSV DLSSASDGNK IYRTSGGETI HADIHFLCVG KPLSSQWLNG 240
  241 TVLKDSLDGK GRVMVDEYLR IRGRSNVFAV GDITNIPEMK QGYIAETHAN VVVKNIKVMM 300
  301 SGGKKKKMST YKPGPELAIV SLGRKDSVAQ FPFVTVVGCL PGLIKSKDLF VGKTRKARGL 360
  361 NPKLV

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Detection Method: PSI-BLAST
Confidence: 69.0
Match: 1ebdA
Description: Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antioxidant activity 3.37477730756688 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 3.17769237742078 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 2.55452748664235 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.6431755180135 bayes_pls_golite062009
binding 1.4227698123368 bayes_pls_golite062009
protein binding 1.16738144711505 bayes_pls_golite062009
thioredoxin-disulfide reductase activity 1.11021120187216 bayes_pls_golite062009
oxidoreductase activity 0.48971304115416 bayes_pls_golite062009
disulfide oxidoreductase activity 0.0160065137614933 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle