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View Structure Prediction Details

Protein: gi|15231954, gi|...
Organism: Arabidopsis thaliana
Length: 567 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231954, gi|....

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
239.0 [0..2] [565..1036]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNLRESLA GGRNIPAISQ FRRGNNNNSN NISQNGFSRD SDENLDLFSK IRRSFPLASS  60
   61 DELPDVSAKL GRLSVGSKIA PKGKDDLLSS AEGGKNDYDW LLTPPGTPLG NDSHSSLAAP 120
  121 KIASSARASS ASKASRLSVS QSESGYHSSR PARSSSVTRP SISTSQYSSF TSGRSPSSIL 180
  181 NTSSASVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [189-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYIRPSSPSS RSSSSARPST PTRTSSASRS STPSRIRPGS SSSSMDKARP SLSSRPSTPT  60
   61 SRPQLSASSP NIIASRPNSR PSTPTRRSPS STSLSATSGP TISGGRAASN GRTGPSLSRP 120
  121 SSPGPRVRNT PQQPIVLADF PLDTPPNLRT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [339-567]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPDRPISAG RSRPVGGSSM AKASPEPKGP ITRRNSSPIV TRGRLTETQG KGRFGGNGQH  60
   61 LTDAPEPRRI SNVSDITSRR TVKTSTTVTD NNNGLGRSFS KSSLDMAIRH MDIRNGKTNG 120
  121 CALSTTTLFP QSIRPASSKI QPIRSGNNHS DSISSNGTEN GNEANEGRRL MGKLSDMDMY 180
  181 ESSRYDALLL KEDVKNTNWL HSIDDRSSDH GLMFDNGGFE LLPEPFAPL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle