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View Structure Prediction Details

Protein: KSA_ARATH
Organism: Arabidopsis thaliana
Length: 802 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KSA_ARATH.

Description E-value Query
Range
Subject
Range
TPSD1_PICAB - Bifunctional levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1
817.0 [0..11] [798..30]
TPSDV_ABIGR - Bifunctional abietadiene synthase, chloroplastic OS=Abies grandis GN=AS PE=1 SV=1
815.0 [0..10] [798..25]
TPSD1_PINTA - Bifunctional levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=1 SV=1
814.0 [0..11] [798..21]
TPSD1_GINBI - Bifunctional levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1
810.0 [0..5] [798..25]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQYHVLNS IPSTTFLSST KTTISSSFLT ISGSPLNVAR DKSRSGSIHC SKLRTQEYIN  60
   61 SQEVQHDLPL IHEWQQLQGE DAPQISVGSN SNAFKEAVKS VKTILRNLTD GEITISAYDT 120
  121 AWVALIDAGD KTPAFPSAVK WIAENQLSDG SWGDAYLFSY HDRLINTLAC VVALRSWNLF 180
  181 PHQCNKGITF FRENIGKLED ENDEHMPIGF EVAFPSLLEI ARGINIDVPY DSPVLKDIYA 240
  241 KKELKLTRIP KEIMHKIPTT LLHSLEGMRD LDWEKLLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [279-802]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQSQDGSFLF SPSSTAFAFM QTRDSNCLEY LRNAVKRFNG GVPNVFPVDL FEHIWIVDRL  60
   61 QRLGISRYFE EEIKECLDYV HRYWTDNGIC WARCSHVQDI DDTAMAFRLL RQHGYQVSAD 120
  121 VFKNFEKEGE FFCFVGQSNQ AVTGMFNLYR ASQLAFPREE ILKNAKEFSY NYLLEKRERE 180
  181 ELIDKWIIMK DLPGEIGFAL EIPWYASLPR VETRFYIDQY GGENDVWIGK TLYRMPYVNN 240
  241 NGYLELAKQD YNNCQAQHQL EWDIFQKWYE ENRLSEWGVR RSELLECYYL AAATIFESER 300
  301 SHERMVWAKS SVLVKAISSS FGESSDSRRS FSDQFHEYIA NARRSDHHFN DRNMRLDRPG 360
  361 SVQASRLAGV LIGTLNQMSF DLFMSHGRDV NNLLYLSWGD WMEKWKLYGD EGEGELMVKM 420
  421 IILMKNNDLT NFFTHTHFVR LAEIINRICL PRQYLKARRN DEKEKTIKSM EKEMGKMVEL 480
  481 ALSESDTFRD VSITFLDVAK AFYYFALCGD HLQTHISKVL FQKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 137.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle