YRC Public Data Repository - Protein Structure Prediction

Protein:	PSDE_ARATH
Organism:	Arabidopsis thaliana
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSDE_ARATH.

Description	E-value	Query Range	Subject Range
gi\|2505940, gi\|1... - gi\|2505940\|emb\|CAA73514.1\| 26S proteasome, non-ATPase subunit [Mus musculus], gi\|10946952\|ref\|NP_067...	323.0	[0..1]	[308..1]
gi\|94469152, gi\|... - gi\|94469152\|gb\|ABF18425.1\| 26S proteasome regulatory complex subunit RPN11 [Aedes aegypti], gi\|1571...	319.0	[0..1]	[308..1]
gi\|195576684, gi... - gi\|195576684\|ref\|XP_002078205.1\| GD22663 [Drosophila simulans], gi\|194190214\|gb\|EDX03790.1\| GD22663 ... gi\|195472773, gi... - gi\|195472773\|ref\|XP_002088673.1\| Rpn11 [Drosophila yakuba], gi\|194174774\|gb\|EDW88385.1\| Rpn11 [Droso... gi\|220957124, gi... - gi\|220957124\|gb\|ACL91105.1\| Rpn11-PA [synthetic construct], gi\|220947746\|gb\|ACL86416.1\| Rpn11-PA [sy... gi\|195342656, gi... - gi\|195342656\|ref\|XP_002037916.1\| GM18036 [Drosophila sechellia], gi\|194132766\|gb\|EDW54334.1\| GM18036... gi\|190660634, gi... - gi\|194856517\|ref\|XP_001968767.1\| GG24318 [Drosophila erecta], gi\|190660634\|gb\|EDV57826.1\| GG24318 [D... Rpn11-PA - The gene Rpn11 is referred to in FlyBase by the symbol Dmel\Rpn11 (CG18174, FBgn0028694). It is a pr...	318.0	[0..1]	[308..1]
gi\|125984402, gi... - gi\|54644283\|gb\|EAL33024.1\| GA14824 [Drosophila pseudoobscura pseudoobscura], gi\|125984402\|ref\|XP_001... gi\|54644283\|gb\|E... - GA14824-PA [Drosophila pseudoobscura], GA14824 [Drosophila pseudoobscura pseudoobscura]	318.0	[0..1]	[308..1]
gi\|109468228 - gi\|109468228\|ref\|XP_001059730.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit ...	316.0	[0..17]	[308..97]
AGAP008617-PA - 26S proteasome regulatory subunit N11\|protein_coding\|3R:13715334:13716447:1\|gene:AGAP008617 gi\|58386372, gi\|... - gi\|58386372\|ref\|XP_314713.2\| AGAP008617-PA [Anopheles gambiae str. PEST], gi\|55239804\|gb\|EAA10169.2\|...	316.0	[0..1]	[308..1]
gi\|92870181 - gi\|92870181\|gb\|ABE79516.1\| Mov34-1; Flagellar motor switch protein FliG-like [Medicago truncatula]	315.0	[0..1]	[308..1]
gi\|66552230 - gi\|66552230\|ref\|XP_393559.2\| PREDICTED: similar to Rpn11 CG18174-PA isoform 1 [Apis mellifera]	315.0	[0..1]	[308..1]
gi\|87248555, gi\|... - gi\|87248555\|gb\|ABD36330.1\| 26S proteasome non-ATPase regulatory subunit 14 [Bombyx mori], gi\|1140526...	315.0	[0..1]	[308..1]
gi\|21592398 - gi\|21592398\|gb\|AAM64349.1\| 26S proteasome non-ATPase regulatory subunit [Arabidopsis thaliana]	315.0	[0..1]	[308..1]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLQRIFGA GGGLGHASPD SPTLDTSEQV YISSLALLKM LKHGRAGVPM EVMGLMLGEF  60
   61 VDEYTVRVVD VFAMPQSGTG VSVEAVDHVF QTNMLDMLKQ TGRPEMVVGW YHSHPGFGCW 120
  121 LSGVDINTQQ SFEALNQRAV AVVVDPIQSV KGKVVIDAFR SINPQTIMLG QEPRQTTSNL 180
  181 GHLNKPSIQA LIHGLNRHYY SIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [204-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INYRKNELEE KMLLNLHKKK WTDGLTLRRF DTHSKTNEQT VQEMLSLAAK YNKAVQEEDE  60
   61 LSPEKLAIVN VGRQDAKKHL EEHVSNLMSS NIVQTLGTML DTVVF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.767	a.47.5	Description not found.
View	Download	0.756	a.7.12	Description not found.
View	Download	0.662	a.46.1	Methionine synthase domain
View	Download	0.656	a.7.1	Spectrin repeat
View	Download	0.654	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.654	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.653	a.7.8	GAT domain
View	Download	0.648	a.7.1	Spectrin repeat
View	Download	0.614	a.7.1	Spectrin repeat
View	Download	0.569	a.7.8	GAT domain
View	Download	0.546	a.7.1	Spectrin repeat
View	Download	0.528	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.520	a.7.8	GAT domain
View	Download	0.505	a.7.8	GAT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits