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View Structure Prediction Details

Protein: gi|15229720, gi|...
Organism: Arabidopsis thaliana
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15229720, gi|....

Description E-value Query
Range
Subject
Range
gi|9294045, gi|9... - gi|9294045|dbj|BAB02002.1| unnamed protein product [Arabidopsis thaliana], gi|91805515|gb|ABE65486.1...
178.0 [0..12] [187..323]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLKPLRHII HEVNRLKKND IIIPFLRSGD YRSFFNLSLT FTPNRIQLPH QEYYLRLSRM  60
   61 HDVASFCAEL IFGLKGLWRN SCFTLEGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.853 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.787 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.778 N/A N/A a.39.1 EF-hand
View Download 0.609 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.577 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain

Predicted Domain #2
Region A:
Residues: [89-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SALPSSLSRI ASSLSVFSKW FTPETIETKE HFSKSRILLI VTIVKLPEFF AKVSLTHHDF  60
   61 ACDMLRSSCL RVLMDLSPMF NALSTFLATL DVILCLICFM YPTIQLMICT LYPSLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle