YRC Public Data Repository - Protein Structure Prediction

Protein:	RNAS1_LEOED
Organism:	Leopoldamys edwardsi
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNAS1_LEOED.

Description	E-value	Query Range	Subject Range
gi\|18376502 - gi\|18376502\|emb\|CAC86435.1\| pancreatic ribonuclease alpha [Berylmys bowersi]	254.0	[0..1]	[149..1]
gi\|26344600, gi\|... - gi\|31981520\|ref\|NP_035401.2\| pancreatic ribonuclease [Mus musculus], gi\|26344600\|dbj\|BAC35949.1\| unn...	252.0	[0..1]	[148..1]
RNS1A_RATEX - Ribonuclease pancreatic alpha-type OS=Rattus exulans PE=3 SV=1	252.0	[0..1]	[148..1]
RNAS1_MUSSA - Ribonuclease pancreatic OS=Mus saxicola GN=Rnase1 PE=2 SV=1	251.0	[0..1]	[148..1]
RNAS1_NIVCR - Ribonuclease pancreatic OS=Niviventer cremoriventer GN=RNASE1 PE=2 SV=1	247.0	[0..1]	[148..1]
RNAS1_URARU - Ribonuclease pancreatic OS=Uranomys ruddi GN=RNASE1 PE=2 SV=1	246.0	[0..1]	[148..1]
RNS1A_RATFU - Ribonuclease pancreatic alpha-type OS=Rattus fuscipes PE=3 SV=1	246.0	[0..1]	[148..1]
RNAS1_MUSPA - Ribonuclease pancreatic OS=Mus pahari GN=Rnase1 PE=2 SV=1	245.0	[0..1]	[148..1]
RNAS1_ABRJE - Ribonuclease pancreatic OS=Abrothrix jelskii GN=RNASE1 PE=2 SV=1	243.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEKSFILF SLLVLVLGWV QPSLGKESSA QKFNRQHMDT EGSSNSSPTY CNQMMTPRGM  60
   61 TKGSCKPVNT FVHETLADVQ AICSQGQVTC KNGKSNCYKS SCALHITDCR LKGNSKYPNC 120
  121 DYKTSDYQKH IIIACEGNPS VPVHFDASE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1c0bA
Description:	Ribonuclease A (also ribonuclease B, S)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits