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View Structure Prediction Details

Protein: YUC8_ARATH
Organism: Arabidopsis thaliana
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YUC8_ARATH.

Description E-value Query
Range
Subject
Range
gi|92889602 - gi|92889602|gb|ABE89940.1| Pyridine nucleotide-disulphide oxidoreductase, class I; FAD-dependent pyr...
238.0 [0..1] [424..1]

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Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENMFRLMDQ DQDLTNNRCI WVNGPVIVGA GPSGLATAAC LHEQNVPFVV LERADCIASL  60
   61 WQKRTYDRLK LHLPKQFCQL PKMPFPEDFP EYPTKRQFID YLESYATRFE INPKFNECVQ 120
  121 TARFDETSGL WRVKTVSKSE STQTEVEYIC RWLVVATGEN AERVMPEIDG LSEFSGEVIH 180
  181 ACDYKSGEKF AGKKVLVVGC GNSGMEVSLD LANHFAKPSM VVRSSLHVMP REVMGKSTFE 240
  241 LAMKMLRWFP LWLVDKILLV LSWMVLGNIE KYGLKRPEMG PMELKSVKGK TPVLDIGAIE 300
  301 KIRLGKINVV PGIKRFNGNK VELVNGEQLD VDSVVLATGY RSNVPYWLQE NEFFAKNGFP 360
  361 KTVADNNGWK GRTGLYAVGF TRKGLSGASM DAVKIAQDIG SVWQLETKQP TKRSRGSLRR 420
  421 CISQQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.09691
Match: 1ebdA
Description: Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
antioxidant activity 2.42155977007451 bayes_pls_golite062009
catalytic activity 1.56773888754354 bayes_pls_golite062009
oxidoreductase activity 0.979787001928241 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.681869592866874 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle