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View Structure Prediction Details

Protein: KAN2_ARATH
Organism: Arabidopsis thaliana
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KAN2_ARATH.

Description E-value Query
Range
Subject
Range
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
216.0 [0..8] [217..1676]
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
214.0 [0..8] [217..1669]
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
204.0 [0..4] [187..1510]
gi|7269716, gi|7... - pir||T10655 hypothetical protein T5F17.60 - Arabidopsis thaliana, gi|7269716|emb|CAB81449.1| putativ...
187.0 [0..16] [370..21]
gi|41052977, gi|... - gi|50911821|ref|XP_467318.1| phosphate starvation response regulator-like [Oryza sativa (japonica cu...
184.0 [0..210] [380..24]
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
179.0 [0..4] [177..1516]
gi|4092885, gi|7... - pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi|4092885|...
176.0 [0..21] [147..1407]
gi|111060144 - gi|111060144|gb|EAT81264.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
175.0 [0..3] [204..1060]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS  60
   61 TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI LTSFQFPTQQ QQQHLQGFLA 120
  121 HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT 180
  181 SSVSNPNYHN HHHQTLNRAR FMPR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM  60
   61 YRTVKTTDKA AASSGQSDVY ENGSSGDNNS DDWMFDMNRK SR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1irzA
Description: Arr10-B
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [307-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSEELTNPLE KSNGLWTNSS GEARLHGKLI DNVAEIMLPS EKELDGKCSS YERISSEEMS  60
   61 SSSISGTSPF KPNLEFTLGR SH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.343 b.114.1 N-utilization substance G protein NusG, insert domain
View Download 0.322 a.64.1 Saposin
View Download 0.300 a.64.1 Saposin
View Download 0.291 a.64.1 Saposin
View Download 0.271 a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.271 a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.254 a.64.1 Saposin
View Download 0.254 a.64.1 Saposin
View Download 0.240 a.64.1 Saposin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle