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View Structure Prediction Details

Protein: LCV2_ARATH
Organism: Arabidopsis thaliana
Length: 261 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCV2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592424 - gi|21592424|gb|AAM64375.1| unknown [Arabidopsis thaliana]
365.0 [0..1] [261..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGKEATTS SLSQGLTPHQ DPDDAPKSPP NSPNSSTRKA CYGVLQSWVS KKFMTGFVVL  60
   61 FPVAVTFLIT WWFIQFVDGF FSPIYENLGV DIF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLGFITSVLF TFFVGIFASS WLGSTVFWLG EQFIRRMPFV KHIYSASKQI STAISPDQNT  60
   61 TAFKEVAIIR HPRIGEYAFG FITSSVTLQT DHGEEELCSV YVPTNHLYIG DVFLVSSEEI 120
  121 IRPNLSIREG IEIIVSVGMT MPQVISHVDR TTNRTPHQHS LRVPLNRL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 82.769551
Match: PF04367.4
Description: No description for PF04367.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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