YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18404463, gi\|...
Organism:	Arabidopsis thaliana
Length:	494 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18404463, gi|....

Description	E-value	Query Range	Subject Range
gi\|11611667 - gi\|11611667\|gb\|AAG39002.1\|AF213399_1 SLT1 protein [Nicotiana tabacum]	904.0	[0..3]	[494..14]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHHPSTLL SMDSSASSHE ELDLEMNNNR QSLLSGPPDI NLPLSAERSP PPPPWNLDAC  60
   61 DILDVGLGSQ AYETENYMSV VPKVGRKCAK RVDSIWGAWF FFSFYFKPAL NEKSKAKIVR 120
  121 DSNGISGFDK SDLKLDVFLV QHDMENMYMW VFKERPENAL GKMQLRSYMN GHSRQGDRLF 180
  181 PFSVEKGFVR SHRMQRKHYR GLSNPQCVHG IELVPLPNLT CLDEEERKRW MELTGRDLNF 240
  241 TIPPEASDFG SWRNLPNTDF ELERP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [266-494]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSLKNPTAN HSKKLLNGSG LNLSTQPSNH SNGEATDLSP SSHKKRKDLF SNGIHEEECC  60
   61 LTVNPQPPVI EAHQNELPTW SNEFTGAMKN VYGPVTAAKT IYEDEEGYLI IISLPFVDLN 120
  121 SVKVSWRNTL THGIIKVSCL STSRVPFIKR HDRTFKLTDS ASEHCPPGEF VREIPLSNRI 180
  181 PEDANIEAYY DGPGSVLEIL VPKLRAGPEE HEVRVCLRPN LGGNDLMLT