YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7019645, gi\|1...
Organism:	Arabidopsis thaliana
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7019645, gi|1....

Description	E-value	Query Range	Subject Range
5812; - /numExons=8 /strand=+ /begin=277951 /end=280566 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|118379508, gi... - gi\|89304687\|gb\|EAS02675.1\| Protein kinase domain containing protein [Tetrahymena thermophila SB210],...	270.0	[0..5]	[371..123]

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Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMIETEISL SGYHKRYGHL KFIELSDPPL TKRPRYSPSV IPPLPDQNPI FTLKLSPILL  60
   61 KNNKRKRFTP KSSSSLSVEE ITKQVFDGVV RKSSSWIKSE FLGRGSYGSV YLATSKKAKT 120
  121 KTTMAIKSAE ISRASSLMDE ERILTRLSSP FIVRCYGHEI AREETLFGGE RTNYNLILEY 180
  181 CSGKSLFDLV NSNLGGLSEK DVKLLARDIL YGLDYIHRAN IIHCDIKPEN ILLAPVENRI 240
  241 RPNGYVAKIG DFGLALEKGS SEYEKASGHR RGTTRYMSPE LIRHGIVDYA VDTWAFGCTV 300
  301 LEMLTGQQVW GEHSDLGSVD WDILIGQSCY IPYIPDWLSE EAQHFLSRCL KRDPASSCKM 360
  361 KYPTLYLVCV SGSFGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2f2uA
Description:	No description for 2f2uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits