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View Structure Prediction Details

Protein: AATP9_ARATH
Organism: Arabidopsis thaliana
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AATP9_ARATH.

Description E-value Query
Range
Subject
Range
gi|75260106 - gi|75260106|ref|ZP_00731384.1| COG0465: ATP-dependent Zn proteases [Escherichia coli E22]
276.0 [0..88] [496..21]

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Predicted Domain #1
Region A:
Residues: [1-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMMGQLWTN TGSALATLMF VYTIFKQFFP LFGPQLEPFL YRLFGRFYPY IQITFHEYSG  60
   61 EHFKRSEAYL GIQSYLSKDS SARAKKLKAN TTKGSKSIVL SMDDKEEITD DFEGIRVWWQ 120
  121 SKKEGATRQS FSFYPEANEK RYYMLRFHRR DREVIIERYL EHVMREGKTI EQKNRERKLY 180
  181 SNTPGQSHGN NSKWSHVTFE HPATFDTLAM EENKKEEIKS DLIKFSKSKD YYKKIGKAWK 240
  241 RGYLLFGPPG TGKSTMIAAM ANFLEYDVYD LELTTVKDNT HLRRLLIETS AKSIIVIEDI 300
  301 DCSLNLTGQR KKKEEEEEDG DDKNTIEKKM MMKNEGENKE SKVTLSGLLN FIDGLWSACG 360
  361 GERIIVFTTN FVDKLDPALI RKGRMDKHIE MSYCCFEAFK VLAKNYLDVE ESEMFEEIKR 420
  421 LLEVEEIKMT PADVGENLLP KSEKEGGETC LKRLIEALKE EKEEAKKKVE EEEEEKQRKK 480
  481 EKVKEIEAEK EKKKKIEEEN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle