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View Structure Prediction Details

Protein: gi|225898617, gi...
Organism: Arabidopsis thaliana
Length: 456 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225898617, gi....

Description E-value Query
Range
Subject
Range
gi|15241123 - gi|15241123|ref|NP_198156.1| transcription regulator [Arabidopsis thaliana]
426.0 [0..1] [455..1]
gi|56783798, gi|... - gi|56783798|dbj|BAD81210.1| unknown protein [Oryza sativa Japonica Group], gi|215706334|dbj|BAG93190...
284.0 [0..153] [451..11]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE  60
   61 DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP AGSAVPVSVI PVDSDPKWHR 120
  121 MTEIVHQRPP IDDSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLFQRLWTDE DEIELLRGFL DYMTMHRGSS SHPPDTAPFY EQIKSKLQLD FNKNQLVEKL  60
   61 RRLKKKYRNV MSKISSGKEV FFKSPHDQST FEISRKIWNQ TGKIIGFEDN NVMDFEETNN 120
  121 HHNTTNGNYS TFNSPSSNPT LELDSENGIE KKLTMSSSSV SRKRSRSRIG KIEEDN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 55.142668
Match: PF04504.5
Description: No description for PF04504.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-456]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPVITPSDGP IASNVNLNEA AAVGIGGNLG GLIEETVKNC VSPVIKEMMN GTTSMMMAAM  60
   61 GGGFPGLGGG GGGGGGHGFG SLSPMFTRPF NFGFGVEGGG NKAVADERWR KQQILELEVY 120
  121 SRRLELVQEQ IRTTLNELKT MPSGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle