YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18406056, gi\|...
Organism:	Arabidopsis thaliana
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18406056, gi|....

Description	E-value	Query Range	Subject Range
gi\|18422298, gi\|... - gi\|18422298\|ref\|NP_568621.1\| peroxisomal membrane 22 kDa family protein [Arabidopsis thaliana], gi\|1...	201.0	[0..9]	[231..31]
gi\|59802852 - gi\|59802852\|gb\|AAX07641.1\| hypothetical protein [Magnaporthe grisea] gi\|39940356, gi\|... - gi\|39940356\|ref\|XP_359715.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA52370....	191.0	[0..44]	[230..43]
gi\|46116304, gi\|... - gi\|46116304\|ref\|XP_384170.1\| hypothetical protein FG03994.1 [Gibberella zeae PH-1], gi\|42550619\|gb\|E...	191.0	[0..44]	[231..43]
gi\|32416286, gi\|... - gi\|32416286\|ref\|XP_328621.1\| hypothetical protein [Neurospora crassa], gi\|28924037\|gb\|EAA33195.1\| co... gi\|85107726 - gi\|85107726\|ref\|XP_962431.1\| hypothetical protein NCU07915 [Neurospora crassa OR74A]	188.0	[0..44]	[230..43]
gi\|222618026, gi... - gi\|34904256\|ref\|NP_913475.1\| P0452F10.16 [Oryza sativa (japonica cultivar-group)], gi\|222618026\|gb\|E...	188.0	[0..44]	[229..6]
CG1662-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG1662 (CG1662, FBgn0030481). It is a protein...	188.0	[0..1]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALGGCGGA GGFWGWNGFD QRRKKKSSGD RGKKRNSGSS DSVDVSRDAG GYRFPLKQAV  60
   61 TAGALTFTGD TIAQLSGRWK KRTALKQSSS ELDEGELWNI FSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.231	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.214	N/A	N/A	c.44.2	Enzyme IIB-cellobiose
View	Download	0.214	N/A	N/A	c.44.2	Enzyme IIB-cellobiose
View	Download	0.207	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.203	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #2

Region A:
Residues: [104-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDWIRALRMS SYGFLLYGPG SYAWYQFLDH SLPKPTATNL VLKVLLNQVI LGPSVIAVIF  60
   61 AWNNLW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [170-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGKLSELGNK YQKDALPTLL YGFRFWVPVS ILNFWVVPLQ ARVAFMSMGS VFWNFYLSST  60
   61 MSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.017729
Match:	PF04117.3
Description:	No description for PF04117.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits