YRC Public Data Repository - Protein Structure Prediction

Protein:	ASHH4_ARATH
Organism:	Arabidopsis thaliana
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASHH4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|109504622, gi... - gi\|109505410\|ref\|XP_001066409.1\| PREDICTED: similar to nuclear receptor binding SET domain protein 1...	296.0	[0..3]	[328..1831]
NSD1_MOUSE - Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 P...	295.0	[0..3]	[328..1731]
gi\|52545752 - gi\|52545752\|emb\|CAH56331.1\| hypothetical protein [Homo sapiens]	293.0	[0..3]	[328..18]
gi\|114603593 - gi\|114603593\|ref\|XP_001139281.1\| PREDICTED: similar to NSD1 isoform 3 [Pan troglodytes]	289.0	[0..3]	[328..1731]
gi\|73953269 - gi\|73953269\|ref\|XP_865744.1\| PREDICTED: similar to Histone-lysine N-methyltransferase, H3 lysine-36 ...	287.0	[0..3]	[328..1731]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKKGSDR NQIRKSLRKL KKQIGELEKL ESPDRLNNVK PIFIKRNIYL KKKLKKKVKD  60
   61 HGIFCSCSLD PGSSTLCGSD CNCGILLSSC SSSCKCSSEC TNKPFQQRHI KKMKLVQTEK 120
  121 CGYGIVADED INSGEFIIEY VGEVIDDKIC EERLWKLNHK VETNFYLCQI NWNMVIDATH 180
  181 KGNKSRYINH SCSPNTEMQK WIIDGETRIG IFATRFINKG EQLTYDYQFV QFGADQDCYC 240
  241 GAVCCRKKLG A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2r3aA
Description:	No description for 2r3aA was found.

Predicted Domain #2

Region A:
Residues: [252-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPCKTKNTTL EEAVKPVACK VTWKTPKLLN SEVRETNLDA SGQAWNNHSQ RKICCRDCIG  60
   61 AYYTAQMKVL TLVVDIFQVM YEDGVTEIID MCREVWKVVT A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.946	a.216.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits