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View Structure Prediction Details

Protein: gi|8346552, gi|1...
Organism: Arabidopsis thaliana
Length: 144 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8346552, gi|1....

Description E-value Query
Range
Subject
Range
gi|32416926, gi|... - gi|32416926|ref|XP_328941.1| predicted protein [Neurospora crassa], gi|28920729|gb|EAA30089.1| predi...
gi|85092298 - gi|85092298|ref|XP_959325.1| hypothetical protein NCU08235 [Neurospora crassa OR74A]
164.0 [0..30] [127..453]
gi|51968858 - gi|51968858|dbj|BAD43121.1| putative protein [Arabidopsis thaliana]
144.0 [0..1] [144..1]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESANIFGSD EDCRSCESGW TMYLASQSHD RDDDCYYGDD DEEEEDSDGG DSMDSDASSG  60
   61 PMEATSYLKL AQEIEEQNSI KKKKKKTNEE MVLVETTRVH NNINHDDDDD DDEDDGDNHD 120
  121 YDDGNDSYSV VHSYVGSVRQ KGLV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.337 d.336.1 Description not found.
View Download 0.259 a.26.1 4-helical cytokines
View Download 0.259 a.26.1 4-helical cytokines
View Download 0.209 d.110.5 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
View Download 0.209 d.110.5 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors


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Created and Maintained by: Michael Riffle