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View Structure Prediction Details

Protein: gi|12597850, gi|...
Organism: Arabidopsis thaliana
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12597850, gi|....

Description E-value Query
Range
Subject
Range
gi|12322536 - gi|12322536|gb|AAG51265.1|AC027135_6 hypothetical protein [Arabidopsis thaliana]
187.0 [0..1] [283..1]

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Predicted Domain #1
Region A:
Residues: [1-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSLMYVS PPESILWEKR SKAILDNIKN FEADFICLQE VDEYHSFFDR NMEAQGYSGI  60
   61 PIENKEGYEC AIFFKPKFAE FITYQTTRIQ GYTKYENLCV APSSSTVSSE SSDVVNAEEL 120
  121 SVVMVAFKIL KPFNHVVIIA SSHLKSGKPD RWDDLKLAQV KTLMTELASF KEIISALTNC 180
  181 SPSVILAGDF NSKPYVHKYI NSDNIPSDID LRSVYEFTKG EPRFTNNVPG FAETLDYMFY 240
  241 THSEIISPVK LLDSPDEVDF LPNEIHPSDH LPIGVEFEIN RNI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.0
Match: 1akoA
Description: EXONUCLEASE III FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.23505510330573 bayes_pls_golite062009
hydrolase activity 0.79070010643157 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.71596812518333 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle